Example workflows

The workflows are intended to show the process of using the HPC system and not to provide a 'state of the art analysis' examples. Please note that used modules, parameters are highly dependent on your research question, species and input data. Therefore, this analysis might not be appropriate for your project. We do not guarantee for correctness.

Kindly note this example worklfow does not replace the detailed information in the compendium and the tutorial 'Introduction to HPC'. Please review the compendium and the Introductory tutorial. Within the workflow, spezific chapters are linked to find more detailed information.

Example workflow for Beginners: Step by step explanations to conduct a basic data analysis using fastq files as input data.

Used terms:

term	meaning
marie	your login name
marie@local	your local computer
marie@login	cluster, login node
marie@compute	cluster, compute node
$	start of code
#	start of explanations, not code